Publications

Chixiang Chen, Biyi Shen, Lijun Zhang, Tonghui Yu, Ming Wang, Rongling Wu (2023). A cartographic tool to predict Disease Risk-associated pseudo-Dynamic Networks from tissue-specific gene expression. Journal of Trace Elements in Medicine and Biology.

Chen Yang, Aaron Burberry, Liangliang Zhang (2023). ggpicrust2: an R package for PICRUSt2 predicted functional profile analysis and visualization.

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Chixiang Chen, Ming Wang (2023). An Efficient Data Integration Scheme to Synthesize Information from MultipleSecondary Outcomes to the Main Data Analysis. biometrics.

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Chixiang Chen, Tonghui Yu, Biyi Shen, Ming Wang (2022). Synthesizing secondary data into survival analysis to improve estimation efficiency. Biometrical Journal.

Biyi Shen, Chixiang Chen, Vernon M Chinchilli, Nasrollah Ghahramani, Lijun Zhang, Ming Wang (2022). Semiparametric marginal methods for longitudinal data adjust-ing for informative cluster size with non-ignorable zeros. Biometrical Journal.

David A Santos, Liangliang Zhang, et al. (2022). Protocolized Training of Advanced Practice Providers for Robotic Surgery Improves the Quality of Intraoperative Assistance. JSLS.

Yushu Shi, Liangliang Zhang, Kim-Anh Do, Christine B. Peterson, Robert R. Jenq (2022). Performance determinants of unsupervised clustering methods for microbiome data. Microbiome.

Maren Schmiester, René Maier, René Riedel, Pawel Durek, Marco Frentsch, Stefan Kolling, Mir-Farzin Mashreghi, Robert Jenq, Liangliang Zhang, et al. (2022). Flow cytometry can reliably capture gut microbial composition in healthy adults as well as dysbiosis dynamics in patients with aggressive B-cell non-Hodgkin lymphoma. Gut Microbes.

Yanxu Yang, Alicia C McDonald, Xingyan Wang, Yunqi Pan, Ming Wang (2022). Arsenic exposure and prostate cancer risk: a multilevel meta-analysis. Journal of Trace Elements in Medicine and Biology.

Alicia C McDonald, Jeremy Gernand, Nathaniel R Geyer, Hongke Wu, Yanxu Yang, Ming Wang (2022). Ambient Air Exposures to Arsenic and Cadmium and Overall and Prostate Cancer-Specific Survival among Prostate Cancer Cases in Pennsylvania, 2004-2014. Cancer.

Ming Wang, Qi Long (2022). Addressing common misuses and pitfalls of P values in biomedical research. Cancer Research.

Chixiang Chen, Biyi Shen, Tianzhou Ma, Ming Wang, Rongling Wu (2022). A statistical framework for recovering pseudo-dynamic networks from static data. Biometrical Journal.

Yushu Shi, Liangliang Zhang, Kim-Anh Do, Christine B. Peterson, Robert R. Jenq (2022). Sparse tree-based clustering of microbiome data to characterize microbiome heterogeneity in pancreatic cancer. Journal of the Royal Statistical Society: Series C (Applied Statistics).

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Erick Riquelme, Yu Zhang, Liangliang Zhang, et al. (2021). Tumor microbiome diversity and composition influence pancreatic cancer outcomes. cell.

Liangliang Zhang, Yushu Shi, Kim-Anh Do, Robert R. Jenq, Christine B. Peterson (2021). ProgPerm: Progressive permutation for a dynamic representation of the robustness of microbiome discoveries. BMC Bioinformatics.

Biyi Shen, Chixiang Chen, Danping Liu, Somnath Datta, Nasrollah Ghahramani, Vernon M Chinchilli, Ming Wang (2021). Joint modeling of longitudinal data with informative cluster size adjusted for zero-inflation and a dependent terminal event. Stat Med..

Maren Schmiester, René Maier, René Riedel, Marco Frentsch, Robert R. Jenq, Christine B. Peterson, Liangliang Zhang, et al. (2021). Flow Cytometric Analysis of Microbial Diversity in Patients with Aggressive Lymphoma Disease Undergoing Chemoimmunotherapy. blood.

K. Lee, Liangliang Zhang (2021). Cumulative Effects of Poverty on Children’s Social-Emotional Development: Absolute Poverty and Relative Poverty. Community Mental Health Journal.

David Santos, Liangliang Zhang (2021). Chemotherapy and Abdominal Wall Closure Technique Increase the Probability of Postoperative Ventral Incisional Hernia in Patients With Colon Cancer. The American Surgeon.

Chixiang Chen, Libo Jiang, Biyi Shen, Ming Wang (2021). A Computational Atlas of Tissue-specific Regulatory Networks. Frontiers in Systems Biology.

Ming Wang (2020). Spatial patterns in prostate cancer-specific mortality in Pennsylvania and its catchment area using Pennsylvania cancer registry data. BMC Cancer.

Alicia C McDonald, Emily Wasserman, Eugene J Lengerich, Jay D Raman, Nathaniel R Geyer, Raymond J Hohl, Ming Wang (2020). Prostate Cancer Incidence and Aggressiveness in Appalachia versus Non-Appalachia Populations in Pennsylvania by Urban-Rural Regions, 2004-2014. The Plant Journal.

Shirley M Bluethmann, Ming Wang (2020). Prostate cancer in Pennsylvania: The role of older age at diagnosis, aggressiveness, and environmental risk factors on treatment and mortality using data from the Pennsylvania Cancer Registry. Cancer Medicine.

Cielito C, Reyes-Gibby, Jian Wang, Liangliang Zhang, et al. (2020). Oral microbiome and onset of oral mucositis in patients with squamous cell carcinoma of the head and neck. Cancer.

Liangliang Zhang, Byron A Zambrano, Jongeun Choi, Whal Lee, Seungik Baek, Chae Young Lim (2020). Intraluminal thrombus effect on the progression of abdominal aortic aneurysms by using a multistate continuous-time Markov chain model. Journal of International Medical Research.

Yingjie Li, Liangliang Zhang, Tapabrata Maiti (2020). High Dimensional Classification for Spatially Dependent Data with Application to Neuroimaging. Electronic Journal of Statistics.

Liangliang Zhang, Yushu Shi, Kim-Anh Do, Robert R. Jenq, Christine B. Peterson (2020). Bayesian compositional regression with structured priors for microbiome feature selection. BMC Bioinformatics.

Ming Wang, Qi Long, Chixiang Chen, Lijun Zhang (2020). Assessing predictive accuracy of survival regressions subject to nonindependent censoring. npj Systems Biology and Applications.

Yushu Shi, Liangliang Zhang, Kim-Anh Do, Robert R. Jenq, Christine B. Peterson (2020). aPCoA: Covariate Adjusted Principal Coordinates Analysis. Bioinformatics.

Han Li, Dahlia Mukherjee, Venkatesh Basappa Krishnamurthy, Caitlin Millett, Kelly A Ryan, Lijun Zhang, Erika F H Saunders, Ming Wang (2019). Use of ecological momentary assessment to detect variability in mood, sleep and stress in bipolar disorder. BMC Res Notes.

Yimei Li, Ming Wang, Ying Kuen Cheung (2019). Treatment and dose prioritization in early phase platform trials of targeted cancer therapies. Journal of the Royal Statistical Society, Series C.

Ming Wang (2019). Temporal and spatial trends and determinants of aggressive prostate cancer among Black and White men with prostate cancer. Cancer Causes Control.

Liangliang Zhang, Zhenxiang Jiang, Jongeun Choi, Chae Young Lim, Tapabrata Maiti, Seungik Baek (2019). Patient-Specific Prediction of Abdominal Aortic Aneurysm Expansion using Bayesian Calibration. IEEE Journal of Biomedical and Health Informatics.

Meixia Ye, Libo Jiang, Chixiang Chen, Xuli Zhu, Ming Wang, Rongling Wu (2019). mp2QTL: Networking phenotypic plasticity QTLs across heterogeneous environments. The Plant Journal.

Mingge Shang, Liangliang Zhang, Xinhua Chen, Shusen Zheng (2019). Identification of Hub Genes and Regulators Associated with Pancreatic Ductal Adenocarcinoma Based on Integrated Gene Expression Profile Analysis. Discovery Medicine.

Chixiang Chen, Biyi Shen, Lijun Zhang, Yuan Xue, Ming Wang (2019). Empirical-likelihood-based criteria for model selection on marginal analysis of longitudinal data with dropout missingness. Biometrics.

Yingjie Li, Liangliang Zhang, Andrea Bozoki, David C. Zhu, Jongeun Choi, Tapabrata Maiti (2019). Early prediction of Alzheimer’s disease using longitudinal volumetric MRI data from ADNI. Health Services and Outcomes Research Methodology.

Cong Xu, Zheng Li, Yuan Xue, Lijun Zhang, Ming Wang (2019). An R package for model fitting, model selection and the simulation for longitudinal data with dropout missingness. Commun Stat Simul Comput.

Chixiang Chen, Libo Jiang, Guifang Fu, Ming Wang, Yaqun Wang, Biyi Shen, Zhenqiu Liu, Zuoheng Wang, Scott A. Berceli, Rongling Wu (2019). An omnidirectional visualization model of personalized gene regulatory networks. npj Systems Biology and Applications.

Zheng Li, Vernon M. Chinchilli, Ming Wang (2019). A time-varying joint frailty-copula model for analyzing recurrent events and a terminal event: an application to the Cardiovascular Health Study. Journal of the Royal Statistical Society, Series C.

Chixiang Chen, Biyi Shen, Aiyi Liu, Rongling Wu, Ming Wang (2019). A Multiple Robust Propensity Score Method for Longitudinal Analysis with Intermittent Missing Data. Biometrics.

Cong Xu, Vernon M Chinchilli, Ming Wang (2018). Joint modeling of recurrent events and a terminal event adjusted for zero inflation and a matched design. Stat Med.

Liangliang Zhang, Yingjie Li, Chae Young Lim, Tapabrata Maiti, Jongeun Choi, David C. Zhu (2018). Analysis on conversion of Alzheimer’s disease using a multi-state Markov chain model. Stat Methods Med Res.

Zheng Li, Vernon M. Chinchilli, Ming Wang (2018). A Bayesian joint model of recurrent events and a terminal event. Biometrical Journal.

C.L. Holz, R. K. Nelli, M. E. Wilson, L. Zarski, W. Azab, R. Baumgardner, N. Osterrieder, A. Pease, Liangliang Zhang, et al. (2017). Viral genes and cellular markers associated with neurological complications during herpesvirus infections. Journal of General Virology.

Ming Wang, Stephen A Matthews, Khaled Iskandarani, Yimei Li, Zheng Li, Vernon M Chinchilli, Lijun Zhang (2017). Spatial-temporal analysis of prostate cancer incidence from the Pennsylvania Cancer Registry. Geospat Health.

Ming Wang, Zheng Li, Eun Young Lee, Mechelle M. Lewis, Lijun Zhang, Nicholas W. Sterling, Daymond Wagner, Paul Eslinger, Guangwei Du, Xuemei Huang (2017). Predicting the multi-domain progression of Parkinson’s disease: a Bayesian multivariate generalized linear mixed-effect model. BMC Medical Research Methodology.

Ming Wang, Zheng Li, Brian Reeves (2016). RECEIVER OPERATING CHARACTERISTIC CURVE INFERENCE FROM A SAMPLE WITH A LIMIT OF DETECTION. American Journal of Epidemiology.

Ming Wang, Lan Kong, Zheng Li, Lijun Zhang (2016). Covariance estimators for Generalized Estimating Equations (GEE) in longitudinal analysis with small samples. Stat Med.

Ming Wang, Qi Long (2016). Addressing issues associated with evaluating prediction models for survival endpoints based on the concordance statistic. Biometrics.

Limin Peng, Amita Manatunga, Ming Wang, Ying Guo, Akm Fazlur Rahman (2016). A general approach to categorizing a continuous scale according to an ordinal outcome. Biometrics.

Sajjad Seyedsalehia, Liangliang Zhang, Jongeun Choi, Seungik Baek (2015). Prior distributions of material parameters for Bayesian calibration of growth and remodeling computational model of abdominal aortic wall. Journal of Biomedical Engineering.

Ming Wang, Junxiang Luo, Haoda Fu, Yongming Qu (2014). Piecewise Negative Binomial Regression in Analyzing Hypoglycemic Events with Missing Observations. Journal of Biometrics & Biostatistics.

Ming Wang (2014). Generalized Estimating Equations in Longitudinal Data Analysis: A Review and Recent Developments. Advances in Statistics.

admin, Robert Ford (2013). An example conference paper. In STC.

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Ming Wang, W Dana Flanders, Roberd M Bostick, Qi Long (2012). A conditional likelihood approach for regression analysis using biomarkers measured with batch-specific error. Stat Med.

Ming Wang, Lijun Zhang (2012). A Bayesian Quantile Regression Analysis of Potential Risk Factors for Violent Crimes in USA. Open Journal of Statistics.

Ming Wang, Qi Long (2011). Modified robust variance estimator for generalized estimating equations with improved small-sample performance. Stat Methods Med Res.

Ming Wang, Maiying Kong, Somnath Datta (2011). Inference for marginal linear models for clustered longitudinal data with potentially informative cluster sizes. Stat Methods Med Res.